Prediction of transcription factor binding sites by constructing 
matrices on the fly from TRANSFAC 4.0 sites. 

Paste pure sequence without header or simple fasta format for 
multiple sequences (>seqname).


Pairsim to known sites
Mat. width in bp
Min num of sites
Min mat. conservation
Sim. of seq to mat.
Factor class level
Search only one factor  (e.g. T00820) 
Search only one class  (e.g. 
Position offset in bp (e.g. 300) 
Output format

Version 2.1 is from January 2000, modified 17.2.2000.
What is it ? Documentation
Samples for testing: Promoters and Exons

(C) Niels Grabe