Abbreviations tagged to molecule names
    Complex binding
  • :
    e.g. A:B:C


    • Modification notation
  • {mod}
    modification; covalent binding
  • {mod}n
    multiple modification (n stands for any number), e.g. hyperphosphorylation; {mod}2 double modification, ...
  • {mod(n)}
    quantifier for modifications at one position, e.g. polyubiquitination at a certain Lys residue: {ub(4)K145}; but also to indicate monoubiquitination: {ub(1)}
  • {modAAposition}{modAAposition}{...
    indicates modifications and positions,
    • e.g. {pS175} or {pY53}{pT99}
  • there are no separate molecule entries for different states of modifications, unless they behave differently


    • Types of modification {mod}
  • {ace} acetylated
  • {ami} amidated
  • {gly} carboxylated
  • {drib} ADP ribosylated
  • {elon} conjugation with elongin B
  • {far} farnesylated
  • {ger} geranylgeranylated
  • {glut} S-glutathionylation
  • {gly} glycosylated
  • {hyd} hydroxylated
  • {met} methylated
  • {myr} myristoylated
  • {nedd} neddylated; conjugation with Nedd8
  • {no} nitrosylated
  • {no2} nitrated
  • {ox} oxidized, e.g. cysteine residues that are linked via an S-bridge (disulfide-bridge) in the oxidized protein intramolecularly, which is disconnected in the reduced form
  • {p} phosphorylated
  • {pal} palmitoylated
  • {re} reduced, e.g. {reCys123Cys125}
  • {sol} soluble
  • {sul} sulfated
  • {sumo} sumoylated; conjugation with SUMO-1
  • {ub} ubiquitinated

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