Cells and tissues |
ATCC
American Tissue Culture Company
Cell Cultures, bacterial and viral strains
http://www.atcc.org/
|
CLDB
This site provides access to the Cell Line Data Base via HyperCLDB;
comprehensive listing of cell lines making use of data contents of ATCC
and DSMZ
http://www.biotech.ist.unige.it/cldb/indexes.html
|
DSMZ
Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH/ German
Collection of Microorganisms and Cell Cultures
Bacteria, Archaea, fungi,
plasmids, phages, human and animal cell lines, plant cell cultures and
plant viruses
http://www.dsmz.de/
|
|
Gene Expression
Differential gene expression in Arabidopsis monito
Tables of listed genes according to their light inducibility
http://www.inra.fr/Internet/Centre/Versailles/BIOCEL/Filtres/index.html
|
GXD
Gene Expression Database
http://www.informatics.jax.org/mgihome/GXD/aboutGXD.shtml
|
Kidney Development Database
Description of kidney development including relevant gene expression patterns
http://golgi.ana.ed.uk/kidhome.html
|
Lung, early development of lung
As part of the glandular organ development database
http://www.ana.ed.ac.uk/anatomy/database/lungbase/lunghome.html
|
Mammary gland development database
As part of the glandular organ development database
http://www.ana.ed.ac.uk/anatomy/database/mammbase/mamhome.html
|
Pancreatic Branching Morphogenesis Database
As part of the glandular organ development database
http://www.ana.ed.ac.uk/anatomy/database/pancbase/panchome.html
|
Prostate Gland Branching Morphogenesis Database
As part of the glandular organ development database
http://www.ana.ed.ac.uk/anatomy/database/prosbase/proshome.html
|
| Salivary Gland Development Database |
| As part of the glandular organ development database |
| http://www.ana.ed.ac.uk/anatomy/database/salgbase/salhome.html |
|
Job opportunities
AWI Bremerhaven
German Site
|
DESY Hamburg
German Site
http://www.desy.de/v2/d/
|
| DKFZ Heidelberg |
| German Site |
| http://www.dkfz-heidelberg.de/scripts/Persabt/stellenextern/stellen.idc |
|
| DLR Köln |
| German Site |
| http://www.dlr.de/Externer_Stellenmarkt/ |
|
| FZK Jülich |
| German Site |
| http://www.kfa-juelich.de/pr/jobs-extern/jobs-extern.html |
|
| FZK Karlsruhe |
| German Site |
| http://hikwww4.fzk.de/stellen/ |
|
| GSF Oberschleissheim |
| German Site |
| http://www.gsf.de/cgi-bin/Stellenausschreibung |
|
| HMI Berlin |
| German Site |
| http://www.hmi.de/stellenangebote/index.html |
|
| UFZ Leipzig-Halle |
| German Site |
| http://www.ufz.de/jobs/ |
|
| Abiw-Bewerberbörse |
| German Site |
| http://www.abiw.de |
|
| Arbeitsamt |
| German Site |
| http://www.arbeitsamt.de/hst/index.html |
|
| Yahoo Deutschland |
| German Site |
| http://de.dir.yahoo.com/handel_und_wirtschaft/beschaeftigung/stellenmarkt |
|
| Kommerzielle Vermittler |
| German Site |
| Yahoo.de Jobsite |
|
| Die Zeit |
| German Site |
| http://www.jobs.zeit.de/ |
|
| Focus |
| German Site |
| http://focus.de/D/DB/db.htm |
|
| Jobs & Adverts |
| No description |
| http://www.jobs.adverts.de/index.phtml |
|
| Stellenbörse |
| German Site |
| http://www.stellenboerse.de |
|
| WDR-Stellenbörse |
| German Site |
| http://jobboerse.wdr.de/job/html/index.html |
|
| Jobware |
| German Site |
| http://www.jobware.de |
|
| Karriere Direkt |
| German Site |
http://www.jungekarriere.com/jukawwwangebot/fn/
juka/SH/0/sfn/buildjuka/url/jobworld/mm/mm_left_navi/ |
|
| CareerPath.com |
| No description |
| http://www.careerpath.com/ |
|
| ArbeitgeberWeb |
| German Site |
| http://www.arbeitgeberweb.de/ |
|
| it-stellenmarkt |
| German Site |
| http://www.it-stellenmarkt.de |
|
| Stellenmarkt direkt |
| German Site |
| http://www.stellenmarkt-direkt.de/ |
|
Mutations |
| OMIM |
Online Medelian Inheritance in Man
A catalog of human genes and genetic disorders |
| http://www3.ncbi.nlm.nih.gov/Omim/ |
|
| TBASE |
The Transgenic/ Targeted Mutation Database
This database gives information on transgenic animals and targeted
mutations generated and analyzed worldwide |
| http://tbase.jax.org/ |
|
Signal transduction pathways and networks |
| CSNDB |
Cell Signaling Networks Database
A data- and knowledge- base for signaling pathways of human cells.
Signaling pathways are compiled as binary relationships of biomolecules
and represented by automatically drawn graphs. |
| http://geo.nihs.go.jp/csndb/ |
|
| GPCRDB |
Information system for G protein-coupled receptors (GPCRs)
http://www.cmbi.kun.nl/7tm/ |
| http://www.gpcr.org/7tm/ |
|
| GPCR mutant database |
| No description |
| http://mgddk1.niddk.nih.gov:8000/MutationAnalysis.html |
|
| GRAP Mutant Database |
GRAP is a database of mutants of family A G-Protein Coupled
Receptors (GRAP) |
| http://www-grap.fagmed.uit.no/GRAP/homepage.html |
|
| The Ion Channel Network |
| Systematic information about ion channel molecules |
| http://www.pain.med.umn.edu/csn/ |
|
| KEGGKyoto Encyclopedia of Genes and Genomes |
| Database on metabolic and regulatory pathways including graphical schemas |
| http://www.genome.ad.jp/kegg/kegg2.html |
|
| LGIC |
| Ligand Gated Ion Channel Database |
| http://www.pasteur.fr/recherche/banques/LGIC/LGIC.html |
|
| Mammalian MAPK signalling pathways |
A clickable image map giving access to textual information with
references about the molecular components involved |
| http://kinase.oci.utoronto.ca/signallingmap.html |
|
| PFBP |
Protein Function and Metabolic Pathways Database
Graphical display of some exemplary pathways in human, yeast and
E. coli; Path Builder |
| http://www.ebi.ac.uk/research/pfmp/ |
|
| PhosphoBase |
A database of phosphorylation sites
This resource provides searchable data which can also be downloaded
as html or text file, and a phosphorylation prediction tool |
| http://www.cbs.dtu.dk/databases/PhosphoBase/ |
|
| PKR |
The Protein Kinase Resource
Using Entrez access to GenBank entries, this site provides information
about protein kinase genes and molecules, sequence alignments,
3D structures, kinase-related diseases and a data analysis tool |
| http://pkr.sdsc.edu/html/index.html |
|
| PlantsP/ PPFGDB |
Functional Genomics of Plant Phosphorylation
A database with information about molecular components involved
in phosphorylation/ dephosphorylation events in plant |
| http://plantsp.sdsc.edu/ |
|
| PPDB |
Phosphoprotein Database
A database giving annotated 2D electrophoresis images of phosphoproteins |
| http://www-lmmb.ncifcrf.gov/phosphoDB/ |
|
| SENTRA |
| A Database of Sensory Signal Transduction Proteins |
| http://wit.mcs.anl.gov/WIT2/Sentra/HTML/sentra.html |
|
| SPAD |
The Signaling Pathway Database (SPAD) is an integrated database
for genetic information and signal transduction systems. The user
can browse lists of signaling molecules to get access to clickable
maps from where individual databases entries can be retrie |
| http://www.grt.kyushu-u.ac.jp/spad/ |
|
| STKE |
Signal Transduction Knowledge Environment
General information site about selected pathways are graphically
displayed (presently two) and hints on/ links to relevant actual
papers and reviews are given |
| http://stke.sciencemag.org/ |
|
Tools |
| PatScan |
A pattern matcher which searches protein or nucleotide sequence
archives for instances of a uder-defined pattern |
| http://www-unix.mcs.anl.gov/compbio/PatScan/HTML/patscan.html |
|
| Pol3scan |
This tool searches for the eukaryotic polymerase III intragenic control
regions A box and B box |
| http://irisbioc.bio.unipr.it/pol3scan.html |
|
| SIGSCAN |
Search for potential TF binding site using patterns from IMD, TFD or
TRANSFAC |
| http://bimas.dcrt.nih.gov/molbio/signal/ |
|
| TESS |
| Transcription Element Search System |
| http://www.cbil.upenn.edu/tess/ |
|
| TFBIND |
Software for searching transcription factor binding sites based
on TRANSFAC data |
| http://tfbind.ims.u-tokyo.ac.jp/ |
|
| TFSEARCH |
| Tool for searching transcription factor binding sites based on TRANSFAC |
| http://www.cbrc.jp/research/db/TFSEARCH.html |
|
| Bio Netbook |
| The BioNetbook is a directory of Web pages for Biology |
| http://www.pasteur.fr/recherche/BNB/bnb-en.html |
|
| Biocenter Helsinki |
| Link Collection about nucleic acid sequence analysis |
| http://biocenter.helsinki.fi/bi/rnd/biocomp/prog2.html |
|
| Universite Aix-Marseille I |
| Online analysis tools |
| http://www.up.univ-mrs.fr/~wabim/english/logligne.html |
|
Transcriptional Regulation |
| Basal Transcription Factor Pages |
| No description |
| http://tfiib.med.harvard.edu/transcription/basaltx.html |
|
| COMPEL |
| Composite Elements Database |
| http://compel.bionet.nsc.ru/ |
|
| DPInteract |
A database on DNA-protein interactions
E.coli DNA-binding proteins and DNA-binding profiles |
| http://arep.med.harvard.edu/dpinteract/ |
|
| EpoDB |
Erythropoiesis database
A database of genes that relate to vertebrate red blood cells. It
includes DNA sequence, structural features, protein information,
gene expression information and transcription factor binding sites |
| http://www.cbil.upenn.edu/EpoDB/ |
|
| The Homeobox Page |
| Collection of information relevant to homeobox genes |
| http://www.biosci.ki.se/groups/tbu/homeo.html |
|
| Homeodomain Resource |
An annotated collection of non-redundant protein sequences,
three dimensional structures and genomic information for the
homeodomain protein family |
| http://genome.nhgri.nih.gov/homeodomain/about/ |
|
| Hox proteins of vertebrates: nomenclature and inde |
| New nomenclature system for Hox genes proposed 1992/1993 |
| http://expasy.cbr.nrc.ca/cgi-bin/lists?hoxlist.txt |
|
| The Labial Homeobox Page |
| Philogenetic information about the labial homeobox gene class |
| http://zoops1.unifr.ch/Nematode/labial.html |
|
| Lung TFs |
| Listing of transcription factor expression during lung development |
| http://www.ana.ed.ac.uk/anatomy/database/lungbase/tf-nptb.html |
|
| Mammary TFs |
| Listing of transcription factor expression during mammary gland development |
| http://www.ana.ed.ac.uk/anatomy/database/mammbase/tf-nptb.html |
|
| NRR |
The Nuclear Receptor Resource
A collection of individual databases on members of the steroid and
thyroid hormone receptor superfamily |
| http://nrr.georgetown.edu/nrr/nrr.html |
|
| Pancreatic TFs |
| Listing of transcription factor expression during pancreatic development |
| http://www.ana.ed.ac.uk/anatomy/database/pancbase/tf-nptb.html |
|
| Pax6 |
| The Human PAX6 Allelic Variant Database Web Site |
| http://www.hgu.mrc.ac.uk/Softdata/PAX6/ |
|
| PLACE |
| A database of motifs found in plant cis-acting regulatory DNA elements |
| http://www.dna.affrc.go.jp/htdocs/PLACE/ |
|
| PlantCARE |
Plant cis-acting regulatory elements
Information about plant promoters and transcription factors,
partially based on TRANSFAC data |
| http://sphinx.rug.ac.be:8080/PlantCARE/index.htm |
|
| RegulonDB |
An extremely well maintained site with a relational database on
transcription regulatory cis-elements and trans-acting factors of E. coli |
| http://www.cifn.unam.mx/Computational_Genomics/regulondb/ |
|
| Salivary TFs |
| Listing of transcription factor expression during salivary gland development |
| http://www.ana.ed.ac.uk/anatomy/database/salgbase/tf-nptb.html |
|
| SCPD |
Saccharomyces cerevisiae Promoter Database
Promoter regions of bakers yeast including information about regulatory
elements and transcription factors |
| http://cgsigma.cshl.org/jian/ |
|
| TRRD |
| Transcription Regulatory Regions Database |
| http://wwwmgs.bionet.nsc.ru/mgs/dbases/trrd4/ |
|
| WT1 mutations |
| Universal WT1-Mutation Database |
| http://www.umd.necker.fr:2003/ |
|
Translation |
| TransTerm |
A database of sequence contexts about the stop and start codons
of many species found in GenBank uncluding codon usage data |
| http://uther.otago.ac.nz/Transterm.html |
|
| UTR home page |
| Information about 5′ and 3′ untranslated regions |
| http://bighost.area.ba.cnr.it/BIG/UTRHome/ |
|
| UTRdb |
| A database of Untranslated Regions of Eukariotic mRNAS |
| http://bigarea.area.ba.cnr.it:8000/BioWWW/#UTRHome |
|
| ACUTS |
| A compilation of Ancient Conserved UnTranslated Sequences |
| http://pbil.univ-lyon1.fr/acuts/ACUTS_home.html |
|
| LEADER |
This compilation provides information about the regulatory parts of
mRNA sequences in SRS format aiming at their prediction |
| http://wwwmgs.bionet.nsc.ru/mgs/systems/leaderrna |
|
