MCatch - Recognition of Composite Elements

Recognition of composite elements
Important: new version of MatrixCatch is available here

Our paper on
MatrixCatch:

Please enter your sequence(s) (plain sequence, FASTA or EMBL formats, you can use cut & paste):

or take our example sequence

Apply P-Value multiple testing correction (help):

Use this P-value threshold

or automatically adjust P-value to get this many CEs per 1Kb of sequence

In addition you can adjust search parameters (about):

Low PWM score threshould for each of the binding sites by (W, 0 - 0.25; 0 - strongest) :	Allow distance variation(ą) between two sites by (D, 0-5; 0 - no length variation):
Composite score should be less than: (CS = sum of scores for individual sites and weighted distance between them, exact formula see here)

Problems using MatrixCatch? See MatrixCatch Help page for method explanations and examples or mail to authors.