Protein-DNA interface analysis program output:
number of chains= 3, chain IDs: ABC
number of bases/residues= 63 11 11
number of atoms= 513 220 225
chain ID, number of bases, ifdna(0/1): A 0 0
KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV
chain ID, number of bases, ifdna(0/1): B 11 1
TAGCCGCCAGC
chain ID, number of bases, ifdna(0/1): C 11 1
GCTGGCGGCTA
chain, chain ID and number of paired bases: 1 A 0
chain, chain ID and number of paired bases: 2 B 11
chain, chain ID and number of paired bases: 3 C 11
chain, chain ID and number of bases contacting protein 2 B 7
B0003 B0004 B0005 B0006 B0007 B0008 B0009
C0024 C0024 C0022 C0021 C0020 C0019 C0018
chain, chain ID and number of bases contacting protein 3 C 8
C0015 C0016 C0017 C0018 C0019 C0020 C0021 C0022
B0012 B0011 B0010 B0009 B0008 B0007 B0006 B0005
Detected binding site
chain, range of basepairs contacting protein, length
2: 3 -> 12 length: 10
B0003 C0024 -> B0012 C0015
Binding sequence:
TAGCCGCCAG
Sequence vs. energy
Full energy model
Calculated PWM (download in TransFac format)
AC M3D000
P0 A C G T 195.3
01 33 960 1 5 C 71
02 0 556 79 363 Y 70
03 0 0 999 0 G 105
04 0 999 0 0 C 144
05 0 1000 0 0 C 207
06 0 0 999 0 G 106
07 854 126 14 4 A 67
08 0 787 0 212 C 82
09 1 990 8 0 C 78
10 459 113 411 15 R 65
XX
Sequence logo: