Gene Regulation

TRANSCompel™ - Documentation

Table 1. Types of composite elements according to the structure of DNA-binding domains of factors interacting. The most frequent types are presented.

Factor 1	Factor 2	Genes	TRANSCompel acc
CEs containing binding sites for ZIP and REL factors
AP-1	NF-k B	E-selectin, human IFN-b , human IL-2, human	C00097, C00102, C00103 C00099 C00165
AP-1	NF-AT	GM-CSF, mouse GM-CSF, human IL-2, human IL-2, mouse IL-3, human IL-4, mouse IL-5, mouse	C00108 C00141, C00142, C00143, C00164 00109 C00149, C00150, C00151, C00157 C00160 C00159 C00161
C/EBP	NF-k B	IL-6, human IL-8, human SAA2, human SAA1, rat SAA, rabbit SAA3, mouse G-CSF, human ICAM-1, human	C00152 C00098 C00100 C00101 C00148 C00153 C00154 C00155
CEs containing binding sites for ZIP and ETS factors
AP-1	c-Ets-1, c-Ets-2	Scavenger Receptor, human GM-SCF, mouse Polyoma virus enhancer Collagenase, human uPA, human uPA, mouse JunB, mouse IgH, mouse TIMP-1, mouse IL-3, human	C00079, C00080 C00081 C00082 C00083 C00084, C00085 C00086 C00087 C00133 C00134 C00139
C/EBPa	PU.1	GM-CSF receptor a , human	C00186
CEs containing binding sites for REL and HMG I factors
NF-k B	HMG I(Y)	E-selectin , human IFN-b , human GRO a , human	C00056, C00058, C00059 C00057 C00140
NF-AT	HMG I(Y)	IL-4, mouse	C00167
CEs containing binding sites for ETS and RUNT factors
ETS	AML1	TCR b , human IgH m , human TCR a , human Mo-MLV TCR b , mouse	C00020 C00173 C00174 C00184 C00185
CEs containing binding sites for ETS and MADS factors
ETS	SRF	c-fos, human egr-1, mouse pip92, mouse	C00022 C00126 C00127

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