PathoDB® Release 2.0 - Documentation
Genotype: Fields
AC |
Accession Number |
genotype accession number |
ID |
Identifier |
Mutated Factor: {"m"(for mutated)}{TRANSFAC® factor name (e.g. p53)}{mutation in brackets (e.g. A159V)}${species acronym (e.g. HS for homo sapiens)}
Mutated Site: {phenotype acronym (e.g. MODY for maturity onset diabetes of the young)}_{gene acronym and position of mutation or element}${species acronym} |
DT |
Date |
creation date; author |
DT |
Date |
date of last update; updater |
GA |
Genotype Name |
name of the disease |
OS |
Species |
biological species (TRANSFAC®,) |
OC |
Taxonomic Classification |
systematic biological classification of the species (TRANSFAC®) |
GC |
Genotype Classification |
classification of the mutation (e.g. (point) mutation or translocation) |
MU |
Mutation |
short description of the mutation, three letter code indicating the mutation type (SUB=substitution, INS=insertion, DEL=deletion), followed by the new nucleotides (SUB, INS) or the missing ones (DEL) |
FM |
First Mutated Position |
first nucleotide position affected by the mutation |
DE |
Description |
detailed description of the mutation on DNA level |
CH |
Chromosomal Location |
chromosomal location of the gene |
GE |
Gene Name |
name of the gene |
DG |
Diagnosis |
list of methods used to find/screen the mutation; extensive information concerning diagnosis methods are available in the linked Diagnosis Method |
MM |
Method(s) |
link to Diagnosis Method (via accession number); Diagnosis Method identifier |
TH |
Therapy |
applied therapy and benefits/results of application if indicated |
CC |
Comment |
additional information |
PT |
Phenotype(s) |
link to related Phenotype(s) (via accession number); phenotype name |
RF |
Related Factor(s) |
link to related Mutated Factor(s) (via accession number) |
RS |
Related Site(s) |
link to related Mutated Site (via accession number) |
DR |
External Databases |
name of database (HGMD, OMIM, MGI, GeneCards); link via database accession number |
RN |
Reference Number |
|
RX |
Reference MEDLINE ID |
|
RA |
Reference Author(s) |
|
RT |
Reference Title |
|
RL |
Reference Journal |
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